If you’re a molecular modeler working in academia or industry, you’ve likely faced the frustration of syncing complex projects across devices or collaborators. Multiple files, scattered notes, simulation outputs, embedded scripts—keeping everything together and making it shareable can be tedious.…

It’s one of the most common struggles when creating a molecular animation: how to smoothly zoom into a specific part of a complex molecular system. Whether you’re preparing a presentation, an educational video, or just trying to understand your structure…

When studying protein conformational changes, it’s not enough to know the start and end states. Understanding how a protein moves between these states—through what pathways and at what energetic cost—is key for applications like drug design, enzyme engineering, or understanding…

For molecular modelers, working between different representations of a biomolecule—3D structures, sequence data, and document-based views—can often lead to frustrating disconnects. You spot something interesting in a protein’s sequence, but selecting it in the sequence doesn’t highlight it in the…

One of the more challenging tasks in molecular modeling is understanding how a ligand navigates its way out of a protein binding pocket. Whether you’re studying drug binding kinetics, escape routes, or trying to visualize molecular flexibility, it can be…

Color is more than visual flair in molecular modeling — it’s a vital tool for interpretation, annotation, and storytelling. Especially when handling large systems, molecular modelers often need to distinguish between specific chains, ligands, or molecular properties at a glance.…

One of the most common challenges in molecular modeling is effectively directing attention in a dynamic scene. Whether you’re showcasing ligand binding, conformational changes, or molecular assemblies, clarity is key. Many modelers default to using transparency to hide or reveal…