For molecular modelers, finding correlations, patterns, or transitions hidden in your simulation data is central to understanding molecular systems. Yet, doing so efficiently can be challenging without the right tools. Enter SAMSON’s Custom Scatter analysis: a powerful, user-friendly tool that…

Integrative molecular design often requires precise control over camera movements, especially when presenting complex systems or capturing the perfect angle for insights. A common challenge molecular modelers face is ensuring that their camera transitions vertically along a system without disrupting…

As molecular modelers, conveying the intricate details of your molecular systems through animations can be a powerful way to communicate complex ideas. Whether you’re presenting your work to colleagues, students, or collaborators, one crucial challenge you might face is how…

One of the most common challenges molecular modelers face is preparing a molecular system for simulation. Without proper cleanup, you may encounter unnecessary complications down the line—caused by elements like alternate locations, unwanted water molecules, or monatomic ions. The GROMACS…

Molecular modelers frequently grapple with questions of spatial distribution: How are certain groups of atoms arranged relative to one another? Are there consistent patterns in their local packing or solvation structure? Understanding these patterns can be pivotal when analyzing molecular…

When working with molecular systems, visualization can be a time-consuming process, especially when dealing with complex systems like protein-ligand interactions or polymers. Is there a way to simplify this? Yes! Visual presets in the SAMSON molecular design platform are a…

One of the key challenges for molecular modelers during visualization is zooming into specific areas of interest without disrupting the context of their entire system. When working with molecular designs, keeping the target point stable while zooming can help ensure…

Flexible molecular docking simulations introduce complexity and advanced realism by allowing parts of the receptor and ligand to adapt dynamically during the docking process. However, these setups can be confusing for beginners. In this guide, we will explore how to…