Author: OneAngstrom

Managing molecular models often means juggling multiple molecules, properties, and hierarchies within a single project. For many researchers and modelers, the challenge lies in keeping track of what’s loaded, what’s selected, or how different parts of a molecule are related.…

When presenting molecular simulations or structural results, small visual choices can significantly impact how viewers perceive your work. One subtle yet powerful way to guide attention and make transitions smoother is by using background animations to switch between scenes. In…

Modeling conformational transitions is central to understanding biomolecular function. But once paths between protein conformations are computed, how can you quickly analyze them and communicate the results? This post offers a practical look at how to visualize and interpret transition…

Creating high-quality molecular animations often requires more than just rotating around a molecule. Sometimes, we want to elevate the entire viewpoint smoothly in a vertical direction—think of showcasing a molecular complex from bottom to top, or emphasizing structural features along…

Running molecular dynamics simulations on large biomolecular systems can be a real challenge when your local computer lacks the necessary computational power. Crashes, long processing times, and limited storage are common issues that slow down research workflows. What if you…

When running molecular simulations, especially with systems involving complex interactions or assembled components, one common challenge is controlling the movement of specific parts. For example, if you’re simulating a nanorobotic gripper, a poorly configured simulation might result in the gripper…

When working with complex molecular systems, creating compelling and informative visualizations can make interpretation much easier—both for you and for your audience. One common challenge for molecular modelers is how to depict crowded molecular environments in a way that emphasizes…

It’s easy to miss an important detail when visualizing complex molecular motions. As a molecular modeler, you might carefully design animations to demonstrate a docking process, a conformational change, or a molecular assembly—but wouldn’t it be helpful to record the…