Author: OneAngstrom

One of the recurring challenges in molecular modeling is checking whether a protein structure is physically plausible before running simulations or using it in predictive workflows. A common issue: residues with unfavorable backbone conformations can skew simulations, especially in homology…

When creating molecular animations, clarity is everything. Whether you’re preparing a presentation, designing teaching materials, or just trying to isolate a part of your model, hiding atomic structures at the right frame can make a big difference in storytelling and…

Whether you’re studying molecular dynamics, designing new molecules, or just trying to get your bearings in a powerful modeling environment, the learning curve of a molecular modeling platform can sometimes feel steep. That’s why SAMSON includes a helpful feature that…

Molecular modelers often face the challenge of understanding how proteins or macromolecular complexes open up to allow small molecules to bind. Deciphering this process is key in fields like drug discovery and biomolecular engineering—but simulating these motions can be time-consuming…

If you prepare molecular presentations or videos, you’ve probably faced the challenge of showing complex movements clearly. Key questions often arise: How do I highlight a particular molecule entering a system? Can I create paths for camera motion? How do…

For molecular modelers performing Umbrella Sampling, one of the early and often time-consuming hurdles is selecting the right set of initial conformations. This step significantly influences simulation efficiency and accuracy. If you’ve ever found yourself wondering how best to extract…

Molecular modeling is an exciting but challenging field, especially when it comes to integrating different tools into a cohesive workflow. Many researchers spend a significant amount of time connecting existing software, writing wrappers, or just manually transferring data between tools.…

When working on complex molecular systems, every second spent navigating software is a second not spent modeling. If you’re using SAMSON for integrative molecular design, you might find yourself wondering: where do I find the tools I need to build,…