Author: OneAngstrom

When preparing molecular systems for simulations, precision and customization can make a significant difference in the quality of your results and the insights derived. One of the most overlooked yet powerful features in the GROMACS Wizard is the ability to…

Molecular modelers often face a common challenge: ensuring the stability of molecular systems before progressing with simulations. Energy Minimization (EM) is a crucial step that resolves steric clashes and poor geometry, preparing your system for the next phase of molecular…

Molecular modeling can be challenging, but SAMSON provides a robust platform to streamline your computational nanoscience workflows. However, starting with SAMSON requires ensuring proper installation and setup. This blog post will guide you through how to install SAMSON seamlessly on…

As a molecular modeler, presenting your work effectively is critical, whether for research, education, or communication with peers. Clear animations can make complex molecular structures and changes comprehensible. One common challenge is progressively fading structures out during presentations or instructional…

As molecular modelers, we often find ourselves engrossed in iterative workflows—making adjustments, analyzing outcomes, and refining structures. But how often have you wished for an easy way to revert changes or redo actions seamlessly? The ability to precisely navigate through…

When setting up molecular simulations, one challenge often faced by researchers is the need to analyze or control specialized groups of atoms—for instance, residues in a particular secondary structure. Standard tools may not always provide the flexibility required to define…

Carbon nanotubes (CNTs) have taken the world of nanotechnology and materials science by storm. Their unique properties make them invaluable for designing nanoscale devices, studying molecular mechanisms, and much more. However, modeling them efficiently can be challenging, especially if you’re…

For molecular modelers, keeping track of specific dynamic regions within a system while navigating complex trajectories is often a challenge. The ‘Follow atoms’ animation feature in SAMSON offers an efficient and intuitive way to solve this pain point, ensuring your…