Author: OneAngstrom

Molecular modelers know that maintaining a consistent and precise view of a molecular system can be a challenge, especially when creating animations or presenting a complex model to an audience. While working with molecular systems in dynamic environments, slight, unintended…

Molecular modeling involves handling intricate details, which means clarity is key when visualizing data. One recurrent challenge for molecular modelers is controlling the visibility of labels to declutter their screens while highlighting critical information. In this post, we’ll explore how…

Protein-ligand docking is a critical step in molecular modeling and drug design, but setting up the system correctly can often seem daunting. If you’re short on time or unsure where to start, the AutoDock Vina Extended SAMSON Extension makes it…

When preparing molecular systems for simulations, small details can make or break the accuracy of your results. One such detail involves water molecules, particularly when they are outside the active site of interest. If you have crystal waters that don’t…

Molecular modeling often requires detailed visualization and adjustment of structures. One recurring challenge is navigating the 3D environment of complex molecular systems to focus on layers or regions of interest efficiently. If you’ve ever struggled with moving your camera vertically…

For molecular modelers and designers, creating intuitive and visually striking animations can be critically important. Whether you are presenting molecular transitions or preparing educational materials, animations that clearly and effectively represent molecular states and processes are essential. But here’s a…

Protein docking can be an intricate process, especially when precision and efficiency are critical for achieving reliable results. For molecular modelers, restricting and fine-tuning the search domain is often a pain point. The Hex Extension in SAMSON provides a robust…

Molecular modeling often requires visualizing complex 3D structures from various perspectives. Whether you’re switching between close-up views of atomic interactions and full-scale molecular assemblies, or comparing projections, the ability to manage camera views efficiently is key to a smoother workflow.…

For molecular modelers, creating intricate nanoscale structures often requires significant time and effort. Whether you’re working in nanotechnology, biomolecular modeling, or material science, designing complex molecular patterns quickly and efficiently can be a challenging task. Fortunately, with SAMSON’s Pattern Editors,…