Author: OneAngstrom

Protein modeling often requires comparing the structures of molecules to identify conserved residues, analyze conformations, or assist in downstream applications like homology modeling. However, aligning protein structures manually can be challenging and time-consuming—especially when precise superpositions are critical. SAMSON’s Protein…

For molecular modelers, understanding protein conformations and how they evolve along a path can be challenging. A vital tool to address this problem is the Ramachandran plot, which provides a clear visualization of protein backbone torsion angles (phi and psi).…

Molecular modelers often encounter a common challenge: how can you optimize specific regions of a molecule without affecting the rest of its structure? This is especially relevant when working on large molecules where only a local part of the system…

For molecular modelers, precision at the sub-molecular level can make all the difference. Whether you’re crafting a new molecule or fine-tuning an existing one, optimizing specific parts rather than the entire structure is often critical. This is where SAMSON’s ability…

For molecular modelers, achieving precise and dynamic control over simulations has often been a challenge. SAMSON, an integrative molecular design platform, offers an innovative solution with its interactive simulation capabilities, enabling users to conduct real-time modeling while maintaining full control…

For molecular modelers, understanding the structural behavior of a group of atoms along a path or trajectory is essential. One critical parameter for this is the Radius of Gyration, which provides a measure of the overall compactness of a molecular…

For molecular modelers, precision in visualizing complex systems is often key to unlocking insights. Whether you're working on large molecular assemblies or fine-grained structural analyses, effectively adjusting your camera's movement can save valuable time and enhance clarity. The Truck camera…

Molecular modelers often face a common challenge when creating presentations: ensuring their audience has enough time to focus on specific molecular conformations or processes without being overwhelmed by fast transitions. This is where the Pause animation in SAMSON becomes an…

For molecular modelers, visualizing how components of a molecular system interact and move is essential. But what happens when you want to undock a group of atoms or meshes from their current positions without manually adjusting them one by one?…