Author: OneAngstrom

For many molecular modelers, diving into a new software platform like SAMSON can feel a bit overwhelming. Knowing where to start and how to perform specific tasks efficiently can be challenging. This is where SAMSON’s interactive tutorials come into play.…

As a molecular modeler, effectively communicating complex molecular data is often a key challenge. Whether you are presenting intricate molecular interactions or preparing animations for academic or industrial purposes, the ability to control what is visible and when can make…

Molecular modelers often face the challenge of precision when working with complex structures. Whether you’re adjusting molecular arrangements or reducing energy configurations for a targeted molecule, you might not always want to apply changes to the entire system. SAMSON, the…

Molecular modelers often face the challenge of visualizing and understanding the intricate movements of biological structures under varying conditions. A pressing topic in recent molecular research has been the motion of the SARS-CoV-2 spike protein, a key player in the…

Creating clear and visually impactful animations is a vital task for molecular modelers. Whether you’re presenting structural changes, complex interactions, or showcasing experimental results, the ability to control the visibility of molecular elements ensures your animations communicate effectively. If you’ve…

Simulating molecular systems effectively is a common challenge for molecular modelers. The Universal Force Field (UFF) implemented in SAMSON provides a systematic way to compute molecular interactions, helping researchers model systems with precision. In this post, we’ll explore how to…

For molecular modelers, the ability to analyze and quantify molecular structures is vital. Whether you’re measuring bond lengths, angles, or dihedrals, having a clear system to document and preserve those measurements can save time and reduce errors. SAMSON, the integrative…

Substructure searching is a common challenge for molecular modelers. Whether you’re analyzing complex molecules or attempting to identify specific patterns within a chemical library, the process can often feel tedious and prone to error. If this sounds familiar, SAMSON’s SMILES…

Periodic boundary conditions are essential for simulating large molecular systems in a computationally efficient way. However, for many molecular modelers, the nuances of these boundaries can raise questions. What do they mean for your simulations? How can you ensure your…