Author: OneAngstrom

Molecular modelers often encounter the challenge of preparing a clean, simulation-ready structure while deciding what to retain and what to remove. One common pain point is dealing with water molecules in Protein Data Bank (PDB) structures. While some water molecules…

Colorizing molecular models is a critical step in molecular design workflows. It not only makes models visually engaging but also aids significantly in data interpretation. SAMSON, the integrative molecular design platform, offers rich tools to colorize structural nodes, visual models,…

Presenting complex molecular models effectively often requires the right timing to ensure your audience understands what you want to convey. One of the key challenges faced by molecular modelers during presentations is maintaining control over the flow of animations. This…

If you have ever worked on structural or visual molecular models and wished for a more dynamic way to present your work, the Pulse animation in SAMSON might be exactly what you’re looking for. This feature lets you manipulate the…

For molecular modelers, managing complex workflows often involves numerous iterative steps. Mistakes or the need to revisit earlier stages are inevitable, but losing progress or struggling to undo operations can be frustrating and time-consuming. This is where SAMSON’s History panel…

Have you ever needed to compare two protein structures and wished for a seamless way to align them? Whether you’re studying conserved residues, analyzing conformations, or building homology models, aligning protein structures is a crucial step for molecular modelers. With…

For molecular modelers, preparing a simulation system often involves ensuring the system reaches a stable temperature before continuing with further stages, such as density stabilization. This process can be time-consuming, but the NVT Equilibration step in SAMSON’s GROMACS Wizard provides…