Author: OneAngstrom

Molecular modelers often find themselves repeating workflows on multiple systems or conformations, which can be tedious and time-consuming. For those working with simulations in GROMACS, this repetitive process can slow down research and productivity. Fortunately, SAMSON’s GROMACS Wizard offers a…

Visualizing the movement of molecules in dynamic simulations is a key challenge for many molecular modelers. Whether you’re studying ligand unbinding, protein conformational changes, or diffusion processes, being able to trace how molecules or groups of atoms move as a…

One persistent challenge for molecular modelers is managing and organizing complex structural data. Whether you’re working with molecules, scripts, conformations, or files, keeping track of this information in an efficient manner can significantly impact your productivity. SAMSON offers a solution:…

As molecular modelers, we often face the challenge of seamlessly integrating repetitive tasks, custom analyses, or specific workflows. Writing and executing Python scripts can bridge this gap, but it’s not always straightforward when starting from scratch. Enter the script command…

Managing complex computations in the cloud can sometimes feel overwhelming for molecular modelers, especially when juggling multiple tasks like protein structure predictions or molecular dynamics simulations. This is where the SAMSON Job Manager steps in as a valuable tool to…

In molecular modeling, presenting accurate animations of atomic trajectories can be a challenging yet essential task. Whether visualizing docking processes, simulations, or assembly steps, keeping track of atom positions over time is key to producing impactful, insightful results. This is…

Molecular modelers often spend extended periods analyzing molecular structures, tweaking settings, and running calculations. While the default interface settings in software platforms are often functional, they may not always provide the most comfortable experience—especially during long work sessions or in…

For molecular modelers, ensuring that protein structures are free of strained conformations is vital. The Ramachandran Plot is a cornerstone tool for visualizing the allowed backbone dihedral angles, but wouldn’t it be helpful to not just inspect but also directly…

Molecular docking is a core task for many researchers and modelers in the field of molecular design. It’s often used to predict the optimal position and orientation of one molecule (such as a ligand) within the binding site of another…