Author: OneAngstrom

Running molecular dynamics simulations on multiple conformations of the same molecule—whether to sample different initial states or to conduct techniques like Umbrella Sampling—can be necessary but very repetitive. If you’ve ever found yourself manually preparing each structure, adjusting box sizes,…

If you spend a significant portion of your day exploring molecular models, you’ve likely lost time navigating complex menus, toggling panels, or trying to remember tool names. This friction breaks flow and adds an unnecessary cognitive load. With SAMSON AI,…

Whether you are preparing a molecular presentation for a class, a conference, or a publication video, one of the most common challenges is how to clearly structure complex visual information. Viewers can quickly become overwhelmed by intricate structures, especially when…

Molecular modelers often explore complex motions of biomolecules to understand conformational changes, such as pocket opening or domain reorientation. These motions are typically investigated through normal mode analysis, but capturing and reusing particular conformations efficiently can be more challenging than…

Running complex molecular simulations like AlphaFold predictions or GROMACS calculations in the cloud is a significant step forward in productivity for molecular modelers. But with great scalability comes an important new challenge: managing and retrieving the extensive outputs these jobs…

One of the most common challenges molecular modelers face is making molecular structures easy to interpret visually. When complex molecular systems are densely packed or intricately folded, it’s often hard to distinguish between overlapping parts or to perceive depth clearly.…

One of the key challenges in molecular dynamics simulations is ensuring your system reaches and maintains a stable target temperature before production runs. For many molecular modelers, this step — known as NVT equilibration — can be a source of…