Author: OneAngstrom

Molecular modelers often face the challenge of navigating complex software interfaces during projects. Time spent searching for tools and views can add significant friction to workflows. Recognizing this, SAMSON provides a set of keyboard shortcuts for its interface, designed to…

A Molecular Modeler’s Guide to Managing Cloud Jobs in SAMSON As a molecular modeler, you’re likely familiar with the challenges of computationally intensive tasks such as protein structure prediction, molecular dynamics simulations, or data-intensive molecular design workflows. These processes often…

In the world of molecular modeling, visualizing trajectories and conformations is essential for understanding and presenting molecular dynamics. Imagine being able to smoothly rewind your molecular trajectory or reverse through conformations in a synchronized and visually compelling way. SAMSON’s Play…

For molecular modelers working with protein structures, comparing specific regions accurately can often seem like a daunting task. Whether you’re focusing on conserved residues, functionally critical domains, or homology modeling, precision in alignment is crucial. Did you know SAMSON’s Protein…

Molecular modelers often encounter scenarios where default settings in GROMACS simulations, though robust, may not fully accommodate specific analysis or simulation needs. One such example involves defining custom index groups based on unique properties of a molecular system. Tailored index…

For molecular modelers, precision matters. However, balancing the need to customize molecular dynamics simulations without getting overwhelmed by parameters can feel daunting. The GROMACS Wizard in SAMSON addresses this concern by allowing you to tailor parameters efficiently, and today we’ll…

One of the most common challenges in molecular modeling is efficiently navigating and envisioning complex molecular structures. This can be particularly daunting when dealing with intricate or layered models. That’s where SAMSON’s camera functionality steps in, offering a robust tool…

If you’re a molecular modeler working with large systems, you know the struggle: running complex simulations locally can overload your machine, lead to long computation times, or even halt your progress entirely. SAMSON’s GROMACS Wizard provides a solution to this…

For molecular modelers, one of the most common challenges is finding efficient, integrated solutions to expand their modeling capabilities. Developing accurate simulations, performing advanced analyses, or integrating external tools into cohesive workflows can be a time-consuming process. Thankfully, SAMSON, the…