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One of the common challenges faced by molecular modelers is the difficulty in visually discerning depth and spatial relationships in molecular structures. Without proper visual cues, analyzing complex molecular models can become tedious and prone to errors. Fortunately, SAMSON offers…

One of the key challenges molecular modelers face is accurately perceiving depth in complex molecular structures. When dealing with intricate molecules, deeper regions often appear less accessible and lack clear visibility. Ambient occlusion, a rendering effect available in SAMSON, can…

When designing DNA nanostructures, starting from scratch can be overwhelming and time-consuming. The ability to import and reuse existing designs is a game-changer for researchers and modelers who aim to save time or learn from published work. Let’s explore how…

For molecular modelers and researchers exploring the mechanisms of viral infection, understanding the motion of the SARS-CoV-2 spike protein is crucial. This motion is key to how the virus recognizes and infects human cells, making it an essential factor in…

For molecular modelers, presenting molecular systems effectively is a recurring challenge. Visual clarity plays an essential role in understanding molecular interactions or showcasing complex molecules to your team or audience. One common pain point is capturing smooth vertical camera movements…

For molecular modelers working with GROMACS simulations, fine-tuning molecular dynamics parameters can often be a necessary yet challenging endeavor. Whether you’re optimizing equilibration protocols or implementing advanced simulation settings, the process of managing custom parameters is critical. Fortunately, SAMSON’s GROMACS…

Modeling molecular systems can often involve visualizing dynamic changes and transitions. A common pain point for many molecular modelers is effectively presenting these changes in a clear and aesthetic way. This is where SAMSON’s Flash Animation feature can step in…

Docking and undocking atoms or groups is a fundamental operation in molecular modeling, enabling researchers to explore structural configurations and refine molecular interactions. But how can you efficiently undock groups of atoms or meshes from their docked positions while maintaining…

Streamlining Protein Conformational Transitions: A Focus on Active Atoms and Sampling Box One of the key challenges faced by molecular modelers is understanding the transition pathways between different conformations of a protein. This process is central to elucidating biological functions…