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One of the significant challenges for molecular modelers studying protein conformational transitions is to ensure that the computational search for transition paths performs efficiently while accurately capturing all relevant motions. This is where the concept of the sampling box plays…

Color can be a powerful tool in molecular modeling. Whether you need to distinguish residues, visualize temperature-related properties, or just create stunning visuals, proper colorization can make the difference between confusion and clarity. In this blog post, we’ll explore how…

Crystal defects play a crucial role in determining a material’s properties, but exploring them can often be a challenging task for molecular modelers. If you’ve ever wondered how to simulate and visualize defects in crystals, SAMSON’s Crystal Creator Extension offers…

Molecular modelers often face the challenge of refining complex molecular structures to find their most stable configuration. SAMSON provides a powerful solution for this through its interactive minimization tool. In this blog post, we’ll explore how you can interactively minimize…

Effective molecular visualizations can sometimes feel like an insurmountable challenge for researchers and modelers. If you’ve ever struggled to clearly communicate attributes like chain ID, temperature factor, or residue polarity in a visually compelling way, SAMSON has a solution that…

For molecular modelers, aligning multiple protein structures or sequences can often be a crucial yet mind-taxing task. Whether you're comparing structural similarities, analyzing evolutionary relationships, or designing new biomolecules, an efficient alignment method can make a world of difference. Thankfully,…

Working on molecular modeling often means adjusting the view to focus on different parts of a structure. But have you ever found yourself repeatedly dragging the camera vertically to explore specific features of your model? Such repetitive tasks can break…

Analyzing molecular pathways often involves dealing with large volumes of scalar data, and identifying hidden patterns or relationships can be overwhelming. The Custom Scatter plot feature in SAMSON offers a straightforward and efficient way to uncover correlations, anticorrelations, clusters, or…

Molecular modelers often grapple with complex simulations that can be both computationally heavy and time-consuming. The challenge lies in efficiently managing, monitoring, and retrieving these computations while ensuring seamless collaboration. SAMSON’s Job Manager offers a solution tailored to ease this…