One of the common pain points in protein-protein docking is long computation times combined with a high number of false positives, especially when working with high-resolution structures. What if there were a simple strategy to significantly reduce search time and…

When preparing molecular animations, one common challenge is visual clutter. Especially in complex systems, it’s easy to lose focus on the region of interest when atoms all around are shifting, vibrating, or drifting across frames. This can be distracting and…

When creating animations of molecular systems, one of the recurring challenges is designing smooth and informative transitions between camera views. Do you ever find yourself manually adjusting the camera just to get that consistent slide across a molecule or complex…

Have you ever struggled to clearly communicate a molecular mechanism or structural change during a presentation or video? For molecular modelers and educators, timing when parts of a molecule appear or disappear can make the difference between confusion and clarity.…

When using SAMSON for molecular modeling, integrating powerful Python packages can significantly improve your workflow, especially if you’re automating simulations, analyzing data, or integrating machine learning into your research. However, choosing the right environment and knowing how to manage Python…

Designing DNA nanostructures is just the beginning. For researchers working in structural DNA nanotechnology, the ability to export a design for further simulation is a critical step in the workflow. Whether you’re preparing input for coarse-grained simulation using oxDNA or…

When presenting complex molecular structures, clarity is key. Whether you’re showing a protein-ligand interaction, the internal components of a large biomolecular complex, or simply trying to make a mechanism more engaging for your audience, it can be helpful to visualize…

For many molecular modelers, automating repetitive tasks or customizing workflows often means writing Python scripts. But when it comes to integrating scripting into powerful modeling environments like SAMSON, the learning curve can feel steep—especially if you’re not a Python expert.…

Building molecules atom by atom is a powerful and precise method, but for many molecular modelers, it can also be time-consuming when dealing with larger or repetitive structures. If you ever felt that constructing molecules takes too long or involves…