SAMSON Blog – Page 149

Breathing Life into Molecules: Using Rock Animation to Enhance Scientific Communication

Communicating molecular motion effectively is a crucial step in both understanding and sharing molecular models, especially in research presentations and teaching environments. Still, representing dynamic behaviors without overwhelming the audience can be a challenge. One simple yet valuable technique for…

Quick Control of Label Visibility in Molecular Models

OneAngstrom

When working with complex molecular systems, labels can be incredibly helpful to annotate and navigate your scene. However, with growing model complexity, an important challenge emerges: too many visible labels clutter your view, making it hard to focus. The good…

Align Your Molecular Views Smoothly with Truck Camera in SAMSON

OneAngstrom

If you’ve ever tried to record a molecular animation and found it difficult to keep the scene visually consistent — especially when scanning along large macromolecular complexes or membrane assemblies — you’re not alone. Many molecular modelers struggle to move…

Making Molecular Models Disappear (And Reappear) with NSL

OneAngstrom

Working with complex molecular systems often means dealing with a cluttered workspace. In SAMSON, the integrative molecular design platform, managing the visibility of various components in your scene can save time and reduce visual overload. If you’ve ever found yourself…

Easily Filter Molecular Segments by Residue Counts in SAMSON

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When working with complex molecular structures, identifying specific segments—such as protein chains or molecular groups—with defined characteristics can be a time-consuming task. One common challenge faced by molecular modelers is quickly finding segments containing a particular number of residues, especially…

Creating Slide-Like Presentations in Molecular Animations

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When showcasing a molecular mechanism or communicating complex simulations, molecular modelers often face a presentation challenge: keeping control of the narrative. Visualizations can flow too fast, or worse, become overwhelming to the audience without clear segmenting. While traditional media like…

How to Define Custom Index Groups for Pulling Simulations in GROMACS Wizard

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When simulating molecular systems using GROMACS, one of the recurrent challenges users face—especially in pulling simulations—is how to define custom index groups. If you’ve ever tried to pull a specific biomolecular segment (like a protein chain) from another while applying…

Simplify Molecular Presentations with the Flash Animation Effect

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When presenting complex molecular systems, clarity is key. Whether you’re building an educational presentation, highlighting dynamic molecular processes, or preparing figures for a talk or publication, how and when you show specific molecular components can change how your message is…

When Labels Disappear: Controlling Label Visibility in Molecular Models

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One of the common challenges molecular modelers face while working with complex systems is organizing and labeling structures effectively—especially when visualizing large biomolecules at different scales. Labels help annotate key atoms, residues, or molecular entities, but there’s often a problem:…

Easily Center and Align Your Molecules in SAMSON

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When working with molecular models, even small inconveniences in object positioning can slow down your workflow. Whether you’re preparing figures for publications, aligning structures for simulations, or simply organizing your workspace, having molecules scattered arbitrarily in 3D space can be…