SAMSON Blog – Page 17

Streamline Reaction Coordinate Studies with Atom Trajectories Export in SAMSON

Reaction coordinate studies and free energy calculations can be challenging, especially when it comes to managing atomic trajectories. For molecular modelers, exporting precise atomic coordinates along defined paths is a crucial but potentially time-intensive task. Did you know that SAMSON’s…

Optimizing Your Molecular Design Workflow with the ‘visible’ Attribute in NSL

OneAngstrom

For molecular modelers, juggling complex datasets and visual models can often lead to an overwhelming number of visual elements on the screen. This can make it challenging to focus on specific aspects of a structure or simulation. The visible attribute…

Mastering Molecule Attributes in SAMSON’s Node Specification Language

OneAngstrom

The world of molecular modeling is intricate, often requiring precise customizations to understand and manipulate molecular structures effectively. That’s where the Node Specification Language (NSL) in SAMSON becomes indispensable, offering users a structured way to define and refine molecule attributes.…

Exploring Chain Attributes in Molecular Modeling

OneAngstrom

Molecular modelers often grapple with large datasets and complex structures, making it essential to quickly filter and analyze specific aspects of molecules. One common challenge is working with chains, an integral part of molecular structures. SAMSON, the integrative molecular design…

Streamline Molecular Design with SAMSON Editors

OneAngstrom

As a molecular modeler, you often face the challenge of efficiently transforming your ideas into accurate and customized molecular models. Whether it’s generating nanotubes, deforming molecular structures, or performing rigid-body transformations, your workflow can quickly become bogged down by repetitive…

Streamlining the Creation of DNA Nanostructures with Adenita

OneAngstrom

Designing DNA nanostructures has become a crucial aspect of modern molecular modeling. However, many researchers and modelers often hit a wall when it comes to tools that allow for seamless creation, visualization, and manipulation of these intricate structures. Adenita, a…

Streamlining Molecular Visualization with SAMSON Visual Presets

OneAngstrom

Visualizing complex molecular systems is often a time-consuming challenge for molecular modelers. Manually applying visual representations and color schemes to represent different elements of molecular structures can feel tedious and prone to inconsistency. If you’re looking for an efficient way…

Enhancing Molecular Precision with SAMSON’s Simple Script Extension

OneAngstrom

For molecular modelers, translating complex designs into precise atomic-level structures can be a major challenge. How do you fine-tune atomic properties, automate structural edits, or create intricate geometries with ease? If you’ve ever faced this struggle, SAMSON’s Simple Script Extension…

Minimizing NMR Structures Without the Hassle of Custom Force Fields

OneAngstrom

For molecular modelers working with NMR-derived structures, refining these structures into high-quality, publication-ready models without extensive manual setup can be a challenge. Whether you’re preparing protein-ligand complexes or handling non-standard residues, ensuring that your final structures are both chemically valid…

Streamlining Molecular Coordination Exports for Path Analysis

OneAngstrom

The ability to track and analyze atom trajectories along molecular pathways is an essential tool in molecular modeling. Whether preparing input files for reaction coordinate studies, performing free energy calculations, or studying ligand binding/unbinding pathways, exporting precise atomic coordinates is…