SAMSON Blog – Page 19

Easily Manage Molecular Selections with Quick Groups in SAMSON

Molecular modeling can quickly become complex when dealing with intricate structures, such as large biomolecules, ligands, or combinations of molecules like proteins and water molecules. A common challenge for researchers and modelers is keeping track of different selections and toggling…

Simplify Molecular Animations with the Hide Effect

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Crafting dynamic and visually compelling molecular animations can be labor-intensive, especially when dealing with complex node behaviors. For molecular designers and researchers aiming to communicate their findings efficiently, the Hide animation in SAMSON can be a powerful ally. So, what…

Demystifying Atom Attributes in Molecular Design

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As molecular modelers, ensuring precision in atom-level queries can often feel like threading a needle. Whether you’re analyzing molecular structures, identifying specific atomic environments, or customizing molecule manipulations, having a flexible and intuitive language for atom attributes is indispensable. Enter…

Mastering Note Attributes for Molecular Modeling

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For molecular modelers using SAMSON, one of the often-overlooked but highly valuable aspects is effectively using note attributes. Notes help organize molecular data, streamline workflows, and improve overall clarity in projects. But how can you unleash their full potential? Understanding…

Streamlining Molecular Visualization with ‘Light’ Attributes in SAMSON

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Molecular modeling often necessitates precise visualization. It's not only about creating elegant renderings but also about efficiently working with complex scenes. If you've ever struggled with managing the appearance and visibility of light nodes in your molecular environment, SAMSON's ‘light’…

Understanding Light Attributes in Molecular Modeling

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When working on molecular modeling projects, the ability to fine-tune visualization and selection settings can make a world of difference. If you’ve used SAMSON for molecular design, you’ve likely encountered light nodes—key elements that determine scene lighting. In this post,…

Streamline Molecular Modeling with Molecule Attributes in SAMSON

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For molecular modelers and computational chemists, managing the diverse properties of molecules efficiently can make a tremendous difference in productivity. SAMSON provides a sophisticated solution to this challenge through its molecule attributes. These attributes not only simplify filtering and querying…

Effortlessly Managing Cloud-Based Molecular Modeling Jobs with SAMSON’s Job Manager

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Molecular modeling often involves computationally intensive tasks like protein structure prediction or molecular dynamics simulations. Such tasks can be time-consuming and resource-heavy if run locally, especially if your hardware is not equipped to handle the load. This is where cloud…

Fine-Tuning Transition Paths with the Parallel Nudged Elastic Band (P-NEB) App

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For molecular modelers, accurately finding minimum energy paths between molecular conformations is a vital aspect of understanding reactions, binding mechanisms, and structural transitions. Yet, bridging the gap between initial and final states swiftly and precisely can often be a challenge.…

Enhancing Molecular Pathways with the P-NEB Method

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Transition pathways are a cornerstone in molecular modeling, as they provide valuable insights into the mechanical and energetic processes between molecular conformations. However, ensuring these pathways are optimized for accuracy and efficiency can be a major pain point for researchers.…