Molecular modelers often face the challenge of constructing complex nanoscale architectures from smaller units. Repetitive tasks like replicating and arranging molecular structures in specific configurations not only consume time but also increase the likelihood of errors. SAMSON’s Pattern Editors provide…

Molecular modelers often face the challenge of tracking and analyzing atomic trajectories during molecular animations. Whether you’re simulating molecular dynamics or presenting assembly processes, having a clear visualization of these trajectories can significantly enhance your understanding of molecular behavior. SAMSON…

When presenting molecular designs, clarity and conciseness are key. There are times when certain elements of your molecular model need to temporarily disappear from view without cluttering the presentation. SAMSON’s Hide animation provides a simple and effective solution for this…

Manually determining ligand unbinding pathways in molecular modeling can be a time-consuming and complex process. The Ligand Path Finder app in SAMSON simplifies this process by allowing users to define precise sampling regions or ‘sampling boxes’ that guide ligand motion…

Analyzing protein-protein interactions and constructing realistic molecular models are everyday tasks for molecular modelers. However, reconstructing biological assemblies or understanding how proteins interact in their natural symmetric forms can be a daunting task without the right tools. The Symmetry Mate…

For molecular modelers, capturing and analyzing atomic movements along defined paths can be invaluable for understanding reaction mechanisms, ligand binding, and free energy calculations. However, extracting accurate trajectory data efficiently is often a complex task. The Export Along Paths extension…

Protein modeling often requires fine-tuning the conformation of residues to ensure the structural integrity of the model. If you’ve struggled with validating or refining specific regions of your protein, the Interactive Ramachandran Plot in SAMSON can be a game-changer. This…

When working with molecular simulations, selecting the most appropriate unit cell shape and dimensions is crucial for achieving efficient and accurate results. This blog post will guide you through the options available for space-filling unit cells supported by the GROMACS…