How to Define the Sampling Box in Ligand Path Finder

Molecular modelers often face the challenge of effectively predicting ligand unbinding pathways in protein-ligand simulations. A crucial step in this process is defining the sampling box, as it heavily influences the search for unbinding pathways by biasing the ligand’s motion.…

Streamlining Molecular Visualizations with Custom Visual Presets

Molecular modelers often grapple with the challenge of effectively visualizing complex molecular systems. Representing a protein, ligand, or a supramolecular structure in a clear and precise manner, especially for collaboration or presentations, can be time-consuming. SAMSON’s Visual Presets feature offers…

Mastering Molecular Hierarchies in SAMSON’s Document View

For molecular modelers working on complex systems, one challenge consistently arises: how to efficiently manage and organize molecular structures, associated data, and workflows. Enter the Document View in SAMSON, a valuable feature designed to simplify how you interact with your…

Understanding SAMSON Extension Compatibility Made Simple

For molecular modelers developing or using extensions in SAMSON, ensuring compatibility between extensions and platform versions can be a key concern. Extensions are vital tools that enhance functionality, yet making sure they run smoothly with the SAMSON platform requires understanding…

Effortlessly Orient Molecular Fragments in SAMSON

For molecular designers and modelers, achieving precise orientation of molecular fragments can often feel like a challenging puzzle. Whether you’re building new molecules or refining structures, orienting fragments appropriately is crucial for accurate modeling and analysis. In SAMSON, this process…