For anyone working in the field of molecular modeling or DNA nanotechnology, exporting precise DNA designs for simulations is a frequent challenge. Preparing models in the right format, ensuring compatibility with downstream tools like oxDNA, and avoiding rework caused by…

Molecular modelers often face the challenge of building a lipid layer around a protein to create a realistic membrane-like environment for simulations. This can be time-consuming and prone to errors if done manually. Fortunately, the Molecular Box Builder, available in…

Effortless Customization of the SAMSON Interface For molecular modelers, having an interface tailored to a personal workflow can make all the difference. If you’ve found yourself hunting for frequently used features or wishing the layout of your tools were more…

In molecular modeling, effectively presenting molecular dynamics and transformations can make a significant difference in conveying insights. One common challenge is smoothly showing and hiding parts of a molecular system during an animation sequence without resorting to transparency, which may…

Working on molecular modeling often involves optimizing your systems, understanding dynamic behaviors, and visually interacting with simulations. But what if your software could let you manipulate atoms – live – while running simulations? Welcome to SAMSON’s interactive simulation functionalities. Today,…

Building accurate and customizable carbon nanotube (CNT) models can be a daunting task for molecular modelers, especially when targeting applications like nanostructure modeling, nanosensors, or transport system simulations. Thankfully, SAMSON’s Nanotube Creator Extension offers a streamlined, intuitive solution for generating…

Molecular modelers often face the challenge of closely monitoring the motion of specific atoms or molecular groups while navigating through complex simulation trajectories. If this sounds familiar, SAMSON’s Follow atoms animation might be the solution you didn’t know you needed.…