For molecular modelers, setting up a production Molecular Dynamics (MD) simulation often feels like entering uncharted territory where parameter selection can make or break the simulation’s success. With the GROMACS Wizard, SAMSON makes this process more intuitive, giving you control…

For molecular modelers, analyzing trajectories or cycling through conformations is a frequent task, yet ensuring an intuitive and smooth workflow can be challenging. The Play path animation in SAMSON makes this process remarkably straightforward, providing an efficient way to visualize…

For molecular modelers, presenting complex data in an understandable and visually appealing way is crucial. Whether you are simulating protein-ligand interactions or exploring molecular dynamics, having the right tools to convey motion and behavior is essential—and this is where the…

Achieving accurate molecular simulations often hinges on proper system equilibrations. For molecular modelers, stabilizing pressure and density in a system can be a daunting, repetitive process. Fortunately, the GROMACS Wizard in the SAMSON platform simplifies this task with its NPT…

Molecular modelers know that maintaining a consistent and precise view of a molecular system can be a challenge, especially when creating animations or presenting a complex model to an audience. While working with molecular systems in dynamic environments, slight, unintended…

Molecular modeling involves handling intricate details, which means clarity is key when visualizing data. One recurrent challenge for molecular modelers is controlling the visibility of labels to declutter their screens while highlighting critical information. In this post, we’ll explore how…

Protein-ligand docking is a critical step in molecular modeling and drug design, but setting up the system correctly can often seem daunting. If you’re short on time or unsure where to start, the AutoDock Vina Extended SAMSON Extension makes it…

When preparing molecular systems for simulations, small details can make or break the accuracy of your results. One such detail involves water molecules, particularly when they are outside the active site of interest. If you have crystal waters that don’t…

Molecular modeling often requires detailed visualization and adjustment of structures. One recurring challenge is navigating the 3D environment of complex molecular systems to focus on layers or regions of interest efficiently. If you’ve ever struggled with moving your camera vertically…