Molecular modelers and computational scientists commonly grapple with the challenge of analyzing dynamic trajectories effectively. Whether you are identifying areas of rapid movements in a molecular system or tracking moments of relative calm, understanding velocity changes across a time-based trajectory…

For molecular modelers, analyzing trajectories and conformational transitions can often feel like piecing together an intricate puzzle. One frequent challenge is revisiting paths – backward. Whether you’re replaying a trajectory in reverse or cycling between crucial conformations, SAMSON’s Play reverse…

Molecular modeling can be a complex task, especially when preparing systems for simulations in GROMACS. One frequent challenge faced by researchers is the presence of unnecessary or problematic data in molecular structures that can lead to downstream issues. To address…

Molecular modeling often involves visualizing structures from different perspectives. This can become a challenge, particularly if you need precise vertical movements to focus on specific areas of your system. The Pedestal camera animation in SAMSON offers an effective way to…

Visualizing complex molecular structures and their dynamics can be a challenging task for molecular modelers. One frequent need is to easily play and analyze molecular trajectories or cycles between conformations, especially in reverse. This is where SAMSON’s Play reverse path…

For molecular modelers working with structural dynamics, understanding the exposure and compaction of molecular structures is crucial. One effective way to track these characteristics is by using the solvent-accessible surface area (SASA) analysis. The SASA feature in the SAMSON Path…

Molecular modelers working with crystals often face challenges in simulating real-world materials. One overlooked yet crucial aspect is the incorporation and assessment of crystal defects. The SAMSON Crystal Creator Extension offers tools to explore and simulate defects in diamonds, enabling…

Molecular modeling often requires customization and flexibility to adapt to various research and design projects. A common pain for molecular modelers is finding a platform that supports a wide range of tools and workflows while allowing for personalization. This is…

One of the most crucial steps in molecular modeling is effectively loading your molecular structures into the software you are using. As a molecular modeler, this task might involve significant pain points: missing formats, confusing workflows, or cumbersome processes when…