When preparing molecular animations, one of the most frustrating challenges is illustrating how components of a structure come together. Whether you’re building a mechanism animation, introducing students to macromolecular complexes, or just trying to make your presentation more visually coherent,…

Creating compelling molecular presentations requires more than just accurate models — it demands a sense of motion, focus, and storytelling. One pain point many molecular modelers encounter is how to smoothly guide a viewer through a molecular scene, especially when…

If you’ve ever tried to predict ligand unbinding pathways from a deeply buried protein pocket, you’ve likely encountered a frustrating silence: no results, incomplete trajectories, or meandering paths in the wrong direction. One common, often overlooked reason? A poorly defined…

When working with complex molecular systems, positioning multiple components accurately can become a real challenge. Whether you’re preparing simulations, building assemblies, or simply organizing structures for a better visual understanding, having intuitive tools for alignment makes all the difference. This…

When working with complex molecular systems, it’s often useful to focus optimization efforts on just a portion of a molecule — for instance, when adjusting a side chain in a protein without disturbing the overall structure. But how do you…

Molecular modelers often need to create presentations or teaching materials that explain complex molecular processes through dynamic visualizations. But even with good data, static views can limit the impact and clarity of your message. If you’ve ever wished for a…

Creating scientific presentations using static images can make it hard to clearly communicate complex molecular processes such as docking, folding, or dynamic interactions. For molecular modelers, visualizing a sequence of changes in molecular configurations is not just attractive—it’s often essential.…

One common challenge in molecular modeling is clearly and efficiently conveying dynamic behavior of systems, especially when preparing scientific presentations or instructional materials. Still images often fall short in highlighting spatial transformations, such as molecular rotations. This is where SAMSON’s…

When setting up molecular dynamics simulations in GROMACS, many researchers face a recurring hurdle: defining custom index groups to isolate specific molecular components—like protein chains—for analysis or for applying pulling forces. This can be tedious and error-prone when done manually…