If you’re a molecular modeler, you’ve likely encountered the need for precise reproducibility or compatibility with specific software versions. When working with GROMACS Wizard on SAMSON, you’re in luck: it allows you to use a custom version of GROMACS instead…

For molecular modelers, achieving an effective and clear visualization of a complex molecular system is frequently a challenge. Whether you are presenting results to a group of researchers, preparing insights for a paper, or simply analyzing molecular interactions, getting the…

When working on molecular models, there are times when you need to focus on certain elements while temporarily hiding others. Adjusting these visibilities manually across different frames can be time-consuming and prone to errors. The Hidden animation in SAMSON provides…

Center-of-mass (COM) pulling simulations are an essential tool for molecular modelers aiming to explore interactions or dissociations between molecular systems. Traditionally, setting up such simulations can be quite intricate, requiring careful attention to system preparation, box dimensions, and pulling parameters.…

For anyone tackling molecular modeling challenges, creating custom polymers with precise structural requirements can be a daunting task. That’s where SAMSON’s Polymer Builder Extension steps in — offering the ability to design flexible, complex polymers from scratch using custom monomers.…

One of the challenges faced by molecular modelers is the efficient creation of custom polymers for simulation or design. The Polymer Builder extension in SAMSON provides an intuitive solution to this problem through its monomer registration feature. This feature allows…

Molecular modelers frequently face a challenge when defining efficient search spaces for ligand unbinding pathways. The right configuration of search domains can significantly impact the quality of discovered pathways, ensuring they align with real biological mechanisms. In this blog post,…