For many molecular modelers, building complex molecular simulations from scratch can feel overwhelming. Especially when it comes to coarse-grained (CG) systems, ensuring proper setup, solvation, and ionization often becomes a bottleneck. The GROMACS Wizard in the SAMSON platform offers a…

In molecular modeling, creating clear and visually engaging presentations is essential for communicating complex structures and processes effectively. A common challenge is managing the visibility of specific components within your model, particularly when you need them to disappear at key…

For molecular modelers, creating accurate and visually compelling animations often requires precise control over atomic positions. Have you ever wanted certain atoms or groups of particles to remain completely fixed during transitions between animation frames? The Hold atoms feature in…

For molecular modelers, one of the most pressing challenges is streamlining repetitive tasks, automating complex workflows, and extending software functionalities to fit the specific needs of a project. SAMSON’s Python Console is an indispensable feature designed to address these challenges,…

Creating captivating molecular presentations often involves more than just showing data and models—it's also about delivering a visually engaging experience. One way to elevate your molecular presentations is by mastering the art of smooth background transitions. This blog post explains…

When setting up molecular docking, one challenge researchers often face is accurately accounting for the flexibility of molecular bonds. Do you make every bond flexible? How do you balance docking accuracy and computational time? If you’ve asked yourself these questions,…

One of the recurring challenges in molecular modeling is simulating interactions between molecular chains. A prime example is center-of-mass (COM) pulling, an essential method for studying molecular dynamics when exploring pulling forces and changes in molecular internal structures. Setting up…

Molecular modeling often requires specialized tools for different tasks, from simulating molecular dynamics to analyzing complex structures. However, finding and integrating these tools can sometimes be challenging for researchers and developers. This is where the SAMSON Extensions Marketplace comes in…

Molecular modeling often requires precision and consistency, especially when preparing animations or movies to showcase a specific perspective of your work. One common challenge that many modelers face is maintaining a steady camera view throughout some frames without unwanted shifts…