One of the challenges molecular modelers often face is positioning groups of atoms or molecular meshes for advanced simulations and studies. Precisely arranging these structures can be tedious and time-consuming without the right tools. The Dock animation in SAMSON offers…

As a molecular modeler, exploring molecular dynamics and conformational changes is a core part of gaining insightful results. But what if you want to reverse a trajectory or observe an alternate temporal sequence? This is where SAMSON’s Play reverse path…

For molecular modelers, achieving system stability is a cornerstone of successful molecular dynamics simulations. One of the critical steps in this process is NPT equilibration, which ensures the system’s density stabilizes and becomes ready for production simulations. If you’ve been…

In molecular modeling, positioning groups of atoms or meshes accurately can often be a key challenge. Whether you’re performing docking studies or building a presentation to explain molecular behavior, ensuring that components align properly is essential. This is where the…

When working on molecular modeling, clear communication of your ideas and findings is crucial. One common challenge is creating precise visual effects that draw attention to critical aspects of your molecular structure, without altering unrelated settings such as target points…

For molecular modelers, refining protein structures and identifying strained residues is a crucial task. This process often involves meticulous exploration of the protein’s backbone dihedral angles—an area where tools like the Interactive Ramachandran Plot in SAMSON excel. If you’ve ever…

For molecular modelers wishing to integrate external DNA designs into their projects, understanding how to efficiently import structures is often a major hurdle. SAMSON’s Adenita extension simplifies this process by providing straightforward tools to import DNA nanostructures from Cadnano designs,…

If you’re a molecular modeler, you’ve likely run into the challenge of needing to efficiently select and filter specific nodes, residues, or molecular structures in complex models. Manually combing through large molecular datasets is impractical and tedious. That’s where SAMSON’s…