Author: OneAngstrom

Molecular modeling is all about precision and effectively visualizing complex systems. One common challenge faced by researchers is how to create professional, dynamic animations that can focus on specific areas of interest in their molecular systems. Enter the Dolly camera…

Molecular modelers often struggle with visualizing and presenting complex molecular systems. Whether it’s creating meaningful animations for collaborations, presentations, or scientific publications, getting molecules to appear organized and insightful at their new positions can be a challenging task. The Assemble…

For molecular modelers working with periodic boundary conditions, one crucial concept can make or break the accuracy of your simulations: the minimum image convention. This principle ensures that your solute never interacts with its own periodic images, avoiding incorrect force…

Creating accurate and controlled molecular animations can be a complex challenge for molecular modelers. One recurring task involves holding specific atoms in fixed positions during animation sequences to visualize molecular dynamics effectively. The good news is that the SAMSON molecular…

Creating captivating molecular presentations often boils down to precise timing. As molecular modelers, we sometimes wish to emphasize a critical structure or transitional state by stopping the flow of a presentation momentarily. This is where the Pause animation in SAMSON…

Molecular modelers often face a common challenge: ensuring their protein system is ready for sophisticated simulation workflows, such as analyzing transition paths between conformations. A poorly prepared model can lead to inaccurate results or failed computations. In this post, we’ll…

Protein alignment is a critical step in molecular modeling, whether you’re analyzing evolutionary relationships, studying structural similarities, or preparing homology models. However, aligning sequences and structures can often feel tedious, especially without the right tools. This is where the Protein…

As a molecular researcher or modeler, we’re often juggling intricate tasks that require experimentations, iterations, and precise modifications. But what happens when you make a mistake, or need to revert to a prior state in your molecular model? In the…