Author: OneAngstrom

When working with complex molecular systems, keeping track of movement in specific regions can be challenging, especially if you’re manually controlling the camera or view settings. Thankfully, SAMSON offers a solution with its Follow Atoms animation feature. This feature allows…

Molecular modeling often involves studying how molecules or groups of atoms change shape as they interact or move along a path or trajectory. While measures like the radius of gyration provide a useful insight into size, they can sometimes oversimplify…

For molecular modelers and scientists leveraging Python scripting in SAMSON, managing Python packages efficiently can be a game-changer. Whether you’re integrating specialized libraries for deep learning, bioinformatics, or advanced simulations, SAMSON’s built-in Python Package Manager simplifies the process, ensuring that…

Molecular modeling encompasses a range of challenges, from designing complex systems to running intricate simulations. For professionals in this field, accessing the right tools for specific needs can be daunting. Fortunately, SAMSON Connect offers a unique solution through its comprehensive…

Molecular modeling requires precise control of visual perspectives, particularly when presenting results or fine-tuning molecular structures. A common challenge? Achieving seamless zoom effects while maintaining the target point of focus. For those using the SAMSON molecular design platform, the Zoom…

For molecular modelers working with multiple PDB files, the challenge of preparing protein structures efficiently can be daunting. Missing residues, alternate locations, or unnecessary molecules often require extensive manual work before docking, simulation, or other workflows can begin. Thankfully, SAMSON…

Installing a sophisticated molecular design platform like SAMSON can be an exciting step in your modeling journey, but network constraints, including proxy settings, can sometimes make the process a bit tricky. If you’re in a networked environment requiring a proxy,…

One frequent challenge in molecular modeling is distinguishing between overall rigid-body motion and meaningful internal structural changes. This distinction is crucial for making sense of conformational dynamics, binding events, and other molecular processes. The RMSD (Root Mean Square Deviation) analysis…

For molecular modelers, heavy computational tasks in molecular dynamics simulations can be a bottleneck when performed on local machines. These tasks often require significant computational power, which can lead to long wait times or even make it impractical to perform…