Coarse-graining (CG) is a powerful approach to simplify molecular systems, enabling faster simulations by reducing the complexity of all-atom models. If you’re a molecular modeler looking to apply the MARTINI force field, SAMSON’s Martinize2 Extension offers a streamlined workflow for…

For molecular modelers, translating complex nanosystems into meaningful graphic representations is a recurring challenge. This is where SAMSON’s visual models come into play, offering comprehensive and customizable tools to bridge the gap between complex data and understandable visuals. Whether you’re…

Creating intuitive and visually engaging molecular animations can sometimes feel like a complex task for molecular modelers, especially when working with transparency effects in models. What if there was a tool to make molecular nodes appear and disappear seamlessly? Enter…

Analyzing protein-ligand interactions is a crucial step in molecular modeling and drug design. After performing docking simulations, it is equally important to visually interpret the results for better insights into the molecular interactions. SAMSON, with its advanced visualization tools, makes…

As a molecular modeler, have you ever struggled to closely compare specific regions of biomolecules in order to analyze structural dissimilarities or refine models? Focusing on specific parts of protein sequences for alignment can significantly improve downstream processes like structure-based…

Molecular modeling often involves simulating complex movements of atoms and molecules across time. But what if you could capture these paths seamlessly during a presentation or simulation, and use them for further analysis or visual enhancements? That’s exactly where SAMSON’s…

When setting up molecular simulations, one challenge frequently encountered by molecular modelers is determining how to handle crystal water molecules in a protein system. Some waters, like tightly bound or active-site waters, are functional and should be retained. Others can…

For molecular modelers, precision and flexibility in manipulating atoms at an atomic scale are essential. Whether it’s designing a nanoscale structure or crafting custom material geometries, the ability to control every detail can make all the difference. This is where…