SAMSON Blog – Page 12

Create Intricate Molecular Shapes with SAMSON’s Simple Script Extension

For molecular modelers, precision and flexibility in manipulating atoms at an atomic scale are essential. Whether it’s designing a nanoscale structure or crafting custom material geometries, the ability to control every detail can make all the difference. This is where…

Mastering Folder Attributes in Molecular Modeling

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For molecular modelers who work on complex systems, managing and analyzing folder structures within molecular data sets can be a daunting task. To address this, SAMSON’s Node Specification Language (NSL) provides a comprehensive framework for defining and interacting with folder…

Simplifying Molecular Dynamics: Applying Custom Parameters in SAMSON

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For molecular modelers, managing simulation parameters can sometimes feel overwhelming. Whether it’s energy minimization, equilibration, or production MD simulation, configuring the right settings for molecular dynamics often entails navigating through multiple files and tools. What if there was a way…

Simplifying Molecular Design with Key Property Model Attributes in SAMSON

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If you’re a molecular modeler or designer, you’ve probably felt the frustration of navigating through a complex molecular system just to locate specific properties. Whether you’re managing materials, working with visibility, or dealing with node data, efficiency is everything. One…

Simplify Protein Transition Path Generation with ARAP Interpolation

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In the complex world of molecular modeling, creating realistic and biologically meaningful transition paths between different protein structures is often a challenge. If you’ve struggled with building smooth transition pathways for tasks like conformational analysis or free-energy simulations, you’re not…

Streamlining Molecular Animations with the Hide Effect

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As a molecular modeler, communicating your findings effectively often involves creating compelling animations. But what if you need certain elements to disappear at precise moments of your animation timeline? This is where SAMSON’s Hide animation effect can make a difference.…

Bring Molecular Models to Life with the Pulse Animation

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If you’re an avid molecular modeler, you understand the importance of bringing clarity to complex models when presenting your work. Transitions, like objects smoothly fading in and out, are particularly effective in keeping the audience engaged while conveying information. That’s…

Preparing Protein Models for Conformational Pathway Searches.

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Molecular modelers often encounter challenges when preparing protein systems for advanced analysis like conformational pathway searches. Ensuring accuracy in input models is critical as even minor errors can significantly impact results. This blog post explains how to efficiently prepare protein…

Understanding File Attributes in SAMSON’s Node Specification Language (NSL)

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For molecular modelers working on integrative projects, organizing and precisely targeting specific data within molecular models is a critical task. SAMSON, the cutting-edge platform for molecular design, leverages the Node Specification Language (NSL) to help users effectively control their datasets.…

Understanding Segment Attributes in Molecular Modeling

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Have you ever wondered how to efficiently manage and query molecular segments during your molecular modeling projects? SAMSON provides a robust way to handle segments through its segment attributes. These attributes can significantly enhance your molecular modeling workflow by allowing…