Manually selecting atoms based on spatial patterns, element types, or structural features can be tedious and error-prone, especially in systems with thousands or millions of atoms. If you’ve ever wished you could just select atoms the way you describe them…

Building lipid layers around membrane proteins is a common challenge for molecular modelers. Whether you’re preparing a membrane system for MD simulations or simply studying membrane-protein interactions, manually assembling lipid bilayers can be time-consuming and error-prone. The Molecular Box Builder…

One of the more persistent frustrations for molecular modelers is effectively visualizing nanosystems—whether it’s a protein, an electrostatic field, or a more complex molecular structure. A clear and flexible visual representation can make all the difference in understanding, communicating, and…

When exploring molecular structures, color can be much more than decoration—it can be a powerful tool to convey chemical properties, improve clarity, and communicate findings. But with so many options, how do you choose the right color palette? In SAMSON,…

When working on complex molecular models, one of the last things you want is an overwhelming interface filled with tools competing for your attention. This is where SAMSON’s design choice around editors makes a difference. In SAMSON, only one editor…

One of the recurring challenges in molecular modeling is finding intuitive ways to visualize how molecules change over time. Whether you’re analyzing conformational transitions, exploring reaction mechanisms, or preparing a compelling presentation of a simulation, being able to animate a…