For molecular modelers, one common challenge is efficiently building, editing, and simulating molecular structures that may undergo significant topological changes. SAMSON’s Interactive Modeling Universal Force Field (IM-UFF) offers a solution tailored to this need, seamlessly blending interactive molecular modeling with…

Molecular modeling can become increasingly complex as the scope of your research grows. SAMSON, the integrative molecular design platform, provides a powerful interface to tackle these challenges more efficiently. However, getting around the extensive features of the SAMSON interface for…

If you regularly create molecular presentations, you know how crucial it is to control the pacing. Some frames require extra attention for discussion or analysis, and that’s where the Pause animation in SAMSON can be invaluable. Let’s explore how this…

For molecular modelers, managing complex molecular structures with multiple residues and chains can often feel overwhelming. Keeping track of sequences and their corresponding properties across different views commonly leads to frustration when trying to align selections or visualize modifications. This…

For molecular modelers, minimizing structures to achieve optimized geometries is a routine task. However, selectively minimizing only specific parts of a molecular system can sometimes be challenging, especially when working with large or complex structures. Thankfully, SAMSON provides features tailored…

One of the frequent challenges for molecular modelers is quickly and effectively visualizing complex molecular systems. These systems often involve various components like ligands, receptors, and structural elements, each requiring distinct visual representations and color schemes for clear understanding. Instead…

Molecular dynamics (MD) simulations are a cornerstone in the molecular modeling field, but setting up these simulations often feels daunting, especially when faced with numerous file types and input requirements. With the GROMACS Wizard in the SAMSON platform, selecting and…

Creating compelling molecular presentations can be a challenging task. One frequent hurdle is maintaining the visual appeal and smooth transitions when showcasing complex molecular designs. This is where SAMSON’s Set background animation comes into play, offering an effective way to…

For molecular modelers, one common challenge is accurately analyzing ligand pathways or reaction coordinates while preparing data for applications like free energy calculations or visualization. The Export Along Paths extension in SAMSON offers a powerful solution: effortlessly exporting atomic trajectories…