When preparing molecular systems for simulations, one common challenge faced by molecular modelers is deciding whether to retain or remove crystal waters. These water molecules can be critical in active sites or pose unnecessary computational overhead if irrelevant. The GROMACS…

Creating smooth, professional molecular presentations is a common challenge for molecular modelers. Whether you’re designing a scientific presentation for colleagues or preparing visuals for wider audiences, having dynamic and visually cohesive transitions can make a significant difference. One such feature…

For molecular modelers, presenting molecular systems with clarity and precision is often a key challenge. Whether you’re creating animations for a presentation, sharing insights with a research team, or preparing visualizations for a publication, a smooth and professional camera motion…

For molecular modelers, maintaining focus on specific parts of a molecular system during animations can be a challenging task, particularly if you want to preserve the spatial context of the scene. This is where SAMSON’s ‘Look at Atoms’ animation comes…

One of the challenges molecular modelers often face is efficiently visualizing and navigating complex molecular structures. Whether you’re examining the details of a small molecule or navigating through a massive biomolecular assembly, switching perspectives quickly and effectively can significantly impact…

Molecular modelers often face the challenge of determining realistic transition paths between molecular states, such as ligand binding or unbinding, protein conformational changes, or other dynamic processes. These paths can provide key insights into the mechanisms and energetics of molecular…

When working with intricate molecular models, one of the most common frustrations is the difficulty of accurately perceiving depth and spatial relationships in the viewport. This issue can be particularly challenging when analyzing large molecules with complex structures. Thankfully, SAMSON…

Have you ever wondered how to efficiently explore molecule analogs to identify the most promising candidates for your studies? As a molecular modeler, exploring substitutions and understanding their effects can be a tedious and time-consuming task. This is where SAMSON’s…