When designing molecular animations or tracking atom trajectories, capturing the movement of atoms through space and time is crucial for understanding molecular behavior. However, many users often face challenges when trying to record and manage atomic trajectories effectively. SAMSON’s Record…

When working on molecular designs, reaching a stable and realistic molecular structure is often a critical step. This core task, known as geometry optimization, ensures that the molecular system resides in an energy minimum, which is essential for simulations and…

When running molecular simulations in GROMACS, precise selection and grouping of molecular components can be crucial for efficient analysis or specific simulation needs. However, manually managing these selections can be time-consuming. The GROMACS Wizard in SAMSON offers a streamlined way…

When working with molecular modeling or presenting structural animations, one challenge often arises: how can you effectively highlight important molecular components at key moments? SAMSON’s ‘Shown’ animation is a solution designed precisely for this purpose. The ‘Shown’ Animation: What Does…

One of the common challenges molecular modelers face when setting up a production molecular dynamics (MD) simulation is managing input files. Navigating through gro files, batch projects, and previous runs can feel tedious, especially when juggling multiple steps or iterations.…

One of the challenging aspects in molecular modeling is understanding how molecules interact and separate. The Undock animation in SAMSON addresses this challenge by offering a straightforward way to undock groups of atoms or meshes from their initial docked positions.…

Designing new molecular analogues to study or optimize properties like binding affinity is a common challenge in molecular modeling. But what if there were a quick and efficient way to explore analogue possibilities directly on your platform without tedious manual…

Graphical representation of molecular structures is a key aspect of molecular modeling. Whether you’re visualizing protein structures, analyzing electronic density, or inspecting electrostatic fields, having clear and detailed visuals makes a world of difference. In this blog post, we’ll dive…

For molecular modelers, finding the right tools to enhance workflows, visualize complex data, or run simulations efficiently can be an ongoing challenge. SAMSON, an integrative molecular design platform, offers a flexible solution through SAMSON Extensions. The best part? These Extensions…

For molecular modelers, one common challenge is efficiently manipulating and selecting specific atoms of a structure to explore modifications, analyze behaviors, or prepare systems for simulations. What if there were a way to harness mathematical expressions to precisely select the…