OneAngstrom – Page 143

Making light nodes appear or disappear in SAMSON with visibility flags

Molecular modelers working with complex scenes often need to manage multiple light sources to optimize visual renderings. However, coordinating which lights are actually displayed in a rendered view—without deleting or restructuring the scene—can be tricky. What if you just want…

Accessing Academic Benefits in SAMSON: What You Need to Know

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If you’re a researcher, educator, or student working with molecular modeling, minimizing costs while maximizing access to high-quality tools is likely a key concern. SAMSON, the integrative molecular design platform, offers a simple way for academic users to benefit from…

Controlling Molecular Visibility with the ‘Shown’ Animation in SAMSON

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Creating compelling molecular animations often involves more than just rotating models or showing structural transitions. For many molecular modelers, a key challenge is effectively controlling what is visible and when during an animation. Whether you’re assembling a step-by-step enzyme mechanism,…

Getting Precise with Perspectives: Using Dolly Camera Animation in Molecular Design

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When working on complex molecular visualizations, subtle camera movements can make a big difference. Whether you’re constructing a video for a publication, a presentation, or just trying to visually convey a spatial property of your system, camera animations help guide…

Running GROMACS Simulations in the Cloud Without the Headache

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Preparing and running molecular dynamics simulations can be time-consuming and resource-intensive, especially when working with large or complex systems. One common challenge for molecular modelers is limited access to high-performance computing resources, which are often required for extensive GROMACS simulations.…

Avoiding File Errors in GROMACS Wizard: Smarter Input Selection for NVT Equilibration

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One of the common pain points in molecular dynamics workflows is managing input files — especially when moving through simulation steps like energy minimization to equilibration. If you’re using GROMACS Wizard within SAMSON, there’s good news: the platform provides multiple…

A More Precise Way to Edit Molecular Properties in SAMSON

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When building or studying molecular systems, every detail matters — especially when working with atoms, bonds, and residues. Modifying properties like atomic position, element type, or charge for multiple parts of a system can be time-consuming and error-prone if your…

When Should You Delete Crystal Waters in Molecular Simulations?

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Deciding whether to delete water molecules when preparing molecular systems for simulations is a challenge many researchers face. While tools can bulk-remove these molecules, knowing which water molecules matter is crucial to preserve the accuracy of your results. In many…

Seeing the Imperfections: How to Model Defects in Diamonds

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In the world of materials modeling, the beauty is often in the imperfections. Understanding how defects affect crystal structures is essential for researchers modeling semiconductors, catalysts, and other advanced materials. One recurring challenge is visualizing and testing these defects without…

A Simple Way to Reduce Eye Strain in Molecular Modeling

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For molecular modelers spending hours in front of a screen, interface fatigue is real. Bright interfaces can cause unnecessary eye strain, especially during extended structural modeling or visualization sessions late at night. Fortunately, SAMSON, the molecular design platform, includes a…