Author: OneAngstrom

One of the pivotal considerations in molecular simulations involving periodic boundary conditions is the choice of the unit cell. For researchers and modelers looking to optimize their computational resources while maintaining accuracy, selecting the correct unit cell can make a…

For molecular modelers aiming to simulate realistic biomolecular environments, creating lipid layers around proteins is often a crucial step. Lipid membranes play a fundamental role in cellular processes, and replicating these environments in silico can provide key insights into molecular…

For molecular modelers working with advanced DNA nanostructures, transferring designs between different tools can be a time-intensive task. Whether you’re leveraging designs from Cadnano or incorporating previously-created components, ensuring a smooth import can save hours of manual rework. This is…

For molecular modelers, managing tools and functionalities can often become a time-consuming ordeal. How do you efficiently add functionalities tailored to your needs, experiment with new tools, or ensure a seamless integration? The SAMSON Extensions Marketplace offers a one-stop solution…

Molecular modelers often face significant challenges when analyzing protein conformational transitions. Whether you’re preparing reaction coordinates for free energy simulations or studying functional dynamics, generating smooth and realistic transition paths between protein structures can be daunting. The As-Rigid-As-Possible (ARAP) Interpolator…

For molecular modelers and researchers, building meaningful connections and sharing expertise can be a game-changer for career growth and collaborations. SAMSON Connect offers a robust platform where you can create a compelling public profile to showcase your skills and work.…

Creating compelling molecular visualizations is often a challenge for molecular modelers. Representing complex structures and interactions in an intuitive and visually appealing way can enhance communication, understanding, and even the modeling process itself. One critical component is choosing the right…

One of the most important challenges in molecular modeling today is understanding the dynamic processes of critical biomolecules. The SARS-CoV-2 spike protein is particularly intriguing due to its role in binding to human cells and facilitating viral entry. If you’re…

For molecular modelers, creating accurate and visually compelling animations often requires precise control over particle movements. But what if you need certain atoms to remain fixed in position while the surroundings are animated? That’s where SAMSON’s Hold atoms animation can…