If you are a molecular modeler or researcher studying SARS-CoV-2, understanding the motion of the viral spike protein is crucial. The spike protein is central to the virus’s ability to infect human cells, transitioning from a closed state to an…

For molecular modelers, collaboration often involves juggling countless files, managing access permissions, and making sure the right people have the latest information. These tasks, though necessary, can consume valuable time better spent on actual research and design. Thankfully, SAMSON Connect…

If you’re a molecular modeler using GROMACS for your simulations, there’s a high chance you’ve encountered the need to rely on a specific version of GROMACS for reproducibility or to meet the requirements of your workflow. SAMSON’s GROMACS Wizard has…

For molecular modelers, one recurring challenge lies in efficiently performing molecular dynamics simulations without overburdening local computational resources. If you’ve ever struggled with resource limitations while trying to simulate large systems, GROMACS Wizard in SAMSON can provide a cloud-powered solution…

Simulating molecular systems can be complex, especially when you're looking for an integrative force field that handles a wide range of simulations effectively. For molecular modelers, the Universal Force Field (UFF) in SAMSON offers an automated and flexible way to…

When designing molecular animations or tracking atom trajectories, capturing the movement of atoms through space and time is crucial for understanding molecular behavior. However, many users often face challenges when trying to record and manage atomic trajectories effectively. SAMSON’s Record…

When working on molecular designs, reaching a stable and realistic molecular structure is often a critical step. This core task, known as geometry optimization, ensures that the molecular system resides in an energy minimum, which is essential for simulations and…

When running molecular simulations in GROMACS, precise selection and grouping of molecular components can be crucial for efficient analysis or specific simulation needs. However, manually managing these selections can be time-consuming. The GROMACS Wizard in SAMSON offers a streamlined way…

When working with molecular modeling or presenting structural animations, one challenge often arises: how can you effectively highlight important molecular components at key moments? SAMSON’s ‘Shown’ animation is a solution designed precisely for this purpose. The ‘Shown’ Animation: What Does…

One of the common challenges molecular modelers face when setting up a production molecular dynamics (MD) simulation is managing input files. Navigating through gro files, batch projects, and previous runs can feel tedious, especially when juggling multiple steps or iterations.…