Molecular modelers often face the challenge of effectively perceiving depth and spatial relationships in intricate molecular structures. A simple but powerful solution to improve three-dimensional depth perception in visualizations is ambient occlusion. In this blog post, we’ll explore how SAMSON…

For molecular modelers and researchers, designing custom polymers often feels like assembling a puzzle with missing or mismatched pieces. Whether you're working on synthetic chains, biopolymers, or novel molecular scaffolds, creating tailor-made structures is a meticulous process. Luckily, SAMSON's Polymer…

For molecular modelers exploring ligand unbinding pathways, defining the sampling region—or sampling box—is a key step in obtaining meaningful simulation results. In this post, we will delve into how to effectively set up the sampling box using the Ligand Path…

For molecular modelers, efficiency and productivity often depend on how well their tools align with their specific workflow. That’s why having a customizable interface matters. Thankfully, the SAMSON platform offers a highly adaptable interface that allows you to organize tools…

For molecular modelers, structural alignment is an essential task. Whether you’re preparing a molecule for a simulation, generating visually aligned comparisons, or simply ensuring your models are neatly ordered, misalignments can significantly slow you down. In this post, we’ll cover…

In molecular modeling, maintaining a consistent view of your structure during animations can be crucial. Whether you’re creating presentations, analysis walkthroughs, or molecular movies, unintentional camera movement between frames can disrupt the flow and clarity of your work. This is…

Creating compelling molecular presentations often requires dynamic camera movements to guide the audience’s focus smoothly and effectively. However, many molecular modelers struggle with animating these movements—especially ensuring fluidity between key scenes or positions. With SAMSON’s Move Camera animation feature, you…

Molecular modeling often requires exploring how biomolecules like proteins, RNA, or DNA move and adapt, particularly when studying dynamic interactions like ligand binding or conformational changes. Such investigations can be computationally intensive, but with the Normal Modes Advanced (NMA) module…

For many molecular modelers, building complex molecular simulations from scratch can feel overwhelming. Especially when it comes to coarse-grained (CG) systems, ensuring proper setup, solvation, and ionization often becomes a bottleneck. The GROMACS Wizard in the SAMSON platform offers a…