SAMSON Blog – Page 72

A Quick Guide to Installing SAMSON Without Admin Rights.

For molecular modelers, setting up professional-grade software like SAMSON can sometimes be a time-consuming or frustrating experience, especially when administrative permissions are required. However, SAMSON takes a user-first approach with one of its standout features: you can install it without…

Understanding Property Model Attributes in SAMSON’s NSL

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Molecular modelers often rely on precise attribute filtering and categorization when working with complex molecular systems. In SAMSON’s Node Specification Language (NSL), property model attributes play a pivotal role in enabling this functionality. This blog post introduces you to the…

Effortless Molecular Visualization with Visual Presets in SAMSON

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Visualizing molecular systems can be daunting, especially when dealing with complex structures. However, SAMSON’s “visual presets” feature offers a quick and effective way to streamline this process. Visual presets allow you to apply pre-defined or custom visual settings to molecular…

How to Minimize Specific Parts of Molecules in SAMSON

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As a molecular modeler, you may often encounter situations where it becomes essential to optimize the geometry of a specific part of a molecule without altering the rest of the structure. In SAMSON, this can be achieved by freezing parts…

A Beginner’s Guide to Building Molecules Atom by Atom in SAMSON.

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As a molecular modeler, building molecular structures can be one of the most rewarding yet challenging tasks. Whether you are constructing simple organic molecules or laying the foundation for larger, more complex systems, refining your workflow can make a significant…

Understanding Presentation Attributes in SAMSON’s Node Specification Language

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For molecular modelers working on complex structures and simulations, clarity and customization of your workspace are often top priorities. This blog post delves into a lesser-explored yet incredibly useful feature of SAMSON: Presentation Attributes in the Node Specification Language (NSL).…

Mastering Side Chain Attributes in SAMSON’s Node Specification Language

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For molecular modelers working with complex systems, understanding and manipulating side chain attributes can be a vital step to streamline analyses and simulations. In SAMSON’s Node Specification Language (NSL), side chain nodes hold a wealth of attributes that allow precise…

Demystifying Path Attributes in SAMSON’s NSL

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For molecular modelers, managing paths and their specific attributes in structural models can be a crucial yet time-consuming challenge. Whether you’re working on conformational analysis, interaction studies, or structural refinement, efficiently querying path-related data can be transformative. Enter SAMSON’s Node…

Streamline Molecular Modeling with Positional Analogue Scanning in SAMSON.

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In molecular modeling, exploring the effect of modifications to a molecule can be an intensive and time-consuming process. Whether you’re designing molecules for drug discovery or evaluating substituent effects, manually creating analogue series can slow down your workflow. The positional…

Mastering the Reveal Atoms Animation in Molecular Modeling

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One of the recurring challenges molecular modelers face is effectively visualizing structural changes and transitions in their models. Whether you’re working on a dynamic molecular simulation or preparing a presentation for your research, being able to clearly and progressively reveal…